rs52351472 SNP Detail

Summary

• ID
  rs52351472
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87662956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATTCTGT ATGATCCCAG CACCCCAGAG GTTATGGAAG
  CTCAGAAACA TAGTAGGTTC TCAGACTTTG AGTCTATCCT GAGCTATATA GCAGCATTCT
  A
  TCTCAATACA AACAAAACAA AACAAAACAA AACAAAACAA AACAAAACAA AACACCAGGG
  AGAAGTGGGG TTGGAGAAGC CAGGACAGGG ACCAATGAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135468107	ENSMUSSNP4933861	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320835365	CHEV_3_87559571	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52351472					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87662956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	214 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	471 bp proximal