rs52349844 SNP Detail

Summary

• ID
  rs52349844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCTGA CAGAGACCTT
  AGACTCTTAG GTCTTGGAAA GCAAAACAAA ACAAAACAAA ACAAAAAAAC CCAAAGGTGT
  TAACGTGATG ATTGATGTTG GATATCTGGG GACTGCAGCA CCTTTTTTGG ACCCCATTCA
  AAAAAAACAA AAAACAAAAA ACAAAAAACA AAACAAAACA AAACAAAAAA ACAAACCCCG
  R
  CAATCTTCAA TTTCAGGAAG GTGCCCATTT TGACAGCCTG AAGTTATGCA AGAGCAAGGA
  GCGAGCCTGT GAAAGTGTGC CCTGGGTGGA CAGTCCCTGC CCTTTAAGGA AGGCAGTGAA
  CCCCGGGGAA ACTCAGGTCA GAGCAGAGCC CAGGAAGCTT TGCAATGGAC TTTGTTTTCT
  TTTTCCCACC TATTCTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135676651	ENSMUSSNP6506139	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52349844					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763091 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	572 bp distal
Gm52613	predicted gene, 52613	1429 bp downstream
Palmd	palmdelphin	455 bp upstream
Rr583817	regulatory region 583817	1165 bp distal
Rr583818	regulatory region 583818	124 bp distal
Tssr35360	transcription start site region 35360	891 bp upstream
Tssr35361	transcription start site region 35361	874 bp upstream
Tssr35362	transcription start site region 35362	809 bp upstream
Tssr35363	transcription start site region 35363	750 bp upstream
Tssr35364	transcription start site region 35364	674 bp upstream
Tssr35365	transcription start site region 35365	653 bp upstream
Tssr35366	transcription start site region 35366	627 bp upstream
Tssr35367	transcription start site region 35367	608 bp upstream
Tssr35368	transcription start site region 35368	504 bp upstream
Tssr35369	transcription start site region 35369	438 bp upstream
Tssr35370	transcription start site region 35370	415 bp upstream
Tssr35371	transcription start site region 35371	72 bp downstream