rs52348542 SNP Detail

Summary

• ID
  rs52348542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81816127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGAGGCA GGAGTGGGTG GGTGAGTGCA GTAACACCCT
  CATAGAATCA GGGGGAGGGG GATGGAATAG GGGGTTTTCG TGGGGGAAAA CCAGGAAAGG
  R
  GATAACTTTT GAAATGTAAA GAAATATCCA ACTTTAAAAG CAAAAAAAAA AAAAAAAAAA
  GAAAGAAAGA TCTTGCCTGA ACAAATAAGA TAAAATGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135398616	ENSMUSSNP6194891	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320817062	CHEV_3_81712742	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52348542					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81816127 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	1040 bp upstream
Rr578719	regulatory region 578719	1275 bp proximal