rs52348020 SNP Detail

Summary

• ID
  rs52348020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCT GTGAAGCGGG TGACTCAGTG
  M
  GGGTTGGCGT CCTATCCCCC AATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320719957	CHEV_3_38384132	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52348020					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539359 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	366 bp upstream
Cpgi13104	CpG island 13104	within coordinates
Gm65619	predicted gene, 65619	within coordinates
Rr397648	regulatory region 397648	160 bp downstream
Rr575675	regulatory region 575675	964 bp distal
Rr575676	regulatory region 575676	95 bp distal
Rr575677	regulatory region 575677	within coordinates
Tssr28929	transcription start site region 28929	within coordinates
Tssr33057	transcription start site region 33057	419 bp upstream
Tssr33058	transcription start site region 33058	388 bp upstream
Tssr33059	transcription start site region 33059	346 bp upstream