rs52347013 SNP Detail

Summary

• ID
  rs52347013
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTTGGT CCCGTATAAG
  TATATCTGCT TAGTAGTTTC CTTCAAGACC AAATGTCCAA TCAAACTCTC TGTTGAAAGA
  TAAAACTTGG GACAAACAAG TTCCAGTAGA GCACTGTGCA CACAGAGGGA CTCCCTGCTG
  GAGCCCCGCC TCCCTGTCTC CTCCCTGCTG GAGCCCCGCC TCCCTGCCTC CTCACTGCTG
  A
  AGCCCCGCCT CCCTGTCTCC TCCCTGCTGG AGCCCCGCCT CCCTGTCTCC TCCCTGCTGG
  AGCCCCGCCT CCCTGTCTCC TCCCTGCTGG AGCCCCGCCT CCCTGTCTCC TCCCTGCTGG
  AGCCCCGCCT CCCTGCCACC TCACTGCTGA AGCTCCAACC TCCTTGTCTT CTTACTGCTG
  TACTCTCTTA CACCAGGCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135180534	ENSMUSSNP5859772	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52347013					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893078 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	within coordinates
Rr576615	regulatory region 576615	1346 bp distal
Rr576616	regulatory region 576616	within coordinates