rs52346760 SNP Detail

Summary

• ID
  rs52346760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108385192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAGT CTTAGCCGGG
  GCAGGGAAGG GACTTCGCGG GGCCTGGAGG GAACATGAAT GGTTCAAGAG AGGAGCTGAG
  AGGCCAGAGG AAGGCGCAGT TATGGATAGG ATAGGGATAG GATTCATAAC CAAGTAGGAC
  TGCAGGACTA TTTCACATTA CAGTGTGGTG CCTGCAACTG GAGGCATGGG GAGAAAGGTG
  R
  GCAGAGGGAA GACAGGAAGG GAAAAAGGAG AAAGAAATGA AAAGGAGCCA CTGTCCCAAT
  GTCCCTTCCA CAGTGCCTTA CCTATCAAAG GTTCCACCAC ATTCCAGCAG TGCCCCCTTG
  TGGATAACTC CTGAAATTAC ATGTATCCTT GAGTCCCTGT ATCACTCTTT ACCCAATCAA
  ACAATGAATA GACTATAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133501761	ENSMUSSNP7155122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321892666	CHEV_6_108358225	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52346760					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108385192 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	324 bp distal
Rr636093	regulatory region 636093	within coordinates
Rr636094	regulatory region 636094	100 bp distal
Rr636095	regulatory region 636095	107 bp proximal