rs52345549 SNP Detail

Summary

• ID
  rs52345549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACTCTG CCCAGAAGGT
  GAACTCCAGG CCCTTCACTG CTTGAAGAAG TGTGCACCAG CTGTGTCATC ATGACATTCA
  GGTATGGCTG CATTAAGTGG ACCTAACAGA TGGAAGGTCC AGGTGTCTGT TCAGGTGCCC
  ATCCAGGTGT CCATCCAGGT GTCTGTGCAG GTGTCTGTGC AGGTGCTCAT CCAGGTGTCC
  K
  TGCAGGTGTC TGTGCAGGTG CCCATCCAGG TGTCCATGCA GGTGCCCATC CAGGTGTCCA
  TGCAAGTGTC TGTGCAGGTG CCCATCCAGG TATGCATTCA GGTGTCCGTG CAGGTTAGCT
  GTGAGCCTAC ACAGCTGACT CGGGCTCTAA ACACAGAGTC AGAAAAGAAG AGTTCAGCAT
  GTTGGGATCA TTAAAGGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147659842	ENSMUSSNP683581	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52345549					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611206 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2e	phospholipase A2, group IIE	1081 bp downstream
Rr603039	regulatory region 603039	273 bp proximal
Rr603040	regulatory region 603040	587 bp proximal