rs52341838 SNP Detail

Summary

• ID
  rs52341838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52300222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGCCGT GCTTGCCTTA
  GTTATTCTTA TTTACAACAC TCAGAAGAGG TAGGTCAGAG TCTGTTACCT TTCTTTTCCA
  CCTTGGAGGA AATAAGGCAC AGAACTCTAA ACTACTCCCT GGGGGACCTA GGGGAAGTTG
  GTCTCTCAGG CAGTTAGGTT CTCAACTTGG CGTGTCTAGC TTCCCCTTAA GTTGTTGCCT
  Y
  AACCAACATC CTTAGAATTT CTATCATTGT AAAAACAGAA AGAAAGAAAA AAAAAAGAAA
  GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GGAAGAAAGA GAATTGCATT
  TTCCAGGAGC TTGGAGGCTC CGGTGGTCAG AGGCAAAGGG CCCTCTTACA ATCCCATCCA
  AAGCAAGGGA ACTTCTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60409591	NES15914269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52341838					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60409591	NES15914269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52300222 () rs orientation: forward

Symbol	Name	Function Class
Gm64696	predicted gene, 64696	650 bp upstream
Gm66693	predicted gene, 66693	within coordinates
Rr374957	regulatory region 374957	1239 bp downstream
Rr576506	regulatory region 576506	1609 bp distal
Rr576507	regulatory region 576507	within coordinates
Tssr33259	transcription start site region 33259	1880 bp upstream