rs52341227 SNP Detail

Summary

• ID
  rs52341227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129944190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT CCAGGCATCT GGGGTGTGTG
  R
  GACTGCTATT GTATGCACAT GTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147458293	ENSMUSSNP3384525	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321316741	CHEV_4_129727641	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52341227					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129944190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm12963	predicted gene 12963			1975 bp upstream
Rr600423	regulatory region 600423			1813 bp distal
Rr600424	regulatory region 600424			within coordinates
Tssr39220	transcription start site region 39220			313 bp upstream
Tssr39221	transcription start site region 39221			344 bp upstream