rs52340829 SNP Detail

Summary

• ID
  rs52340829
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38700336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGCAAT CTGATAGACA
  GAAGATTAAA TTCATGGTCC TTGGAGTTGG TTTAGAGAAT AGCTGGCCCC TCCCATGATA
  ACCCCAGAGA GCCAGAGTCA GGATTTAGAG TGTCTAGGGT AACTGGCCTG GAGGGAGGGC
  GATTCTTTTT TTTTTTTTTC TTTTAAATTG GATATTTTCT TTATTTACAT TTTAAATGTT
  T
  TTCCCTTTCC AGGTCTCCCC TTCGGAAACC CCCTAACTCA TCCCCCTCCT CCTTCCTCTA
  TGAGGGTTCT TCCCCACCCA CCCACCCACT CCTGTCTTCC CTCCCTGGCA TTCCCCTACA
  CTGGGGCATC GAACACCCTC AGGCCCAAGG GCCTGTCCTC TCACTAATGT CGAACATCTC
  GCTGATGTCG AACAAGGCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134840390	ENSMUSSNP7045850	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52340829					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38700336 () rs orientation: forward

Symbol	Name	Function Class
Rr575691	regulatory region 575691	1667 bp proximal