rs52340486 SNP Detail

Summary

• ID
  rs52340486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8241949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACATCA GCATCTCAAA
  ACAAAAAACT ATAGCACTAA AGATAACAAG GTTAGGGCTG GAGAGATGGC TCAGCGGTTA
  AGAGCAGTGA CTGCTCTTCC AGAGGTCCTG AGTTTAAATC CCAGCAACCA CATGGTGGGT
  CACAACCATA TGTAATGGGA TCTGACCCTC TCTTCTGGTG TGTCTGAAGA CAGCTACAGT
  R
  TACTCATATA CATAAAATAA GTAAATAAAT CTTTGTTTTA AAAAAATAAA AAGATAACAA
  GGTTCTTTTC TGGTCACTGT CTTACCTGGC AAAGTTTTGT TTGTTTTCAG GGAGCATTGC
  AAAACCTTAG TTTGGAGGAA GAAAAGGACT ATACTTGTTC AAGAACTTAG CATTTCTGAT
  TCTTCTGGGC TTTCGGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132964796	ENSMUSSNP3816398	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52340486					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8241949 () rs orientation: forward

Symbol	Name	Function Class
Rr626362	regulatory region 626362	953 bp distal