rs52340353 SNP Detail

Summary

• ID
  rs52340353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:96981517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA CGACCCGCCC CTGCCCCAGC
  Y
  CGGCCCACCC CCTAGCGAAG CTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145438060	ENSMUSSNP5140681	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52340353					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96981517 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	17 bp upstream
Rr400445	regulatory region 400445	within coordinates
Rr651402	regulatory region 651402	301 bp distal
Rr651403	regulatory region 651403	within coordinates
Rr651404	regulatory region 651404	2 bp proximal
Rr651405	regulatory region 651405	28 bp proximal
Tssr67964	transcription start site region 67964	1 bp upstream
Tssr67965	transcription start site region 67965	328 bp upstream
Tssr73573	transcription start site region 73573	215 bp upstream
Tssr73574	transcription start site region 73574	196 bp upstream
Tssr73575	transcription start site region 73575	168 bp upstream
Usp35	ubiquitin specific peptidase 35	290 bp upstream