rs52337414 SNP Detail

Summary

• ID
  rs52337414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125643378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATAAT AAAAAATGAT
  TCAAATACTA TAGAGAAGTC ATTATCATTT GAGATATAGG TGACAAATGC TATAGCCTTC
  AGAATTATAT ATATATATAT ATACTATATA ATATATAGTA TATAATGAAT AATATATTAT
  ATATAATATA TATACACACA CATATATATG TGTGTGTATA TATATATAAC TTCTTTCACC
  Y
  ACAAGGCAGT TCAGCTGGGC CTGGTCACAT CGTAATGAGT ATCACTACAA GTTGCAAGAA
  GCAGAAGTCT AATTTTACAT TTAATTGATT TAAAATATGA AGGCATAAAG TTTAAAATAA
  TAATGGTATA ATTTACAGCA TAAAGTTCTG TGGTGGAATT TCTTTAAGAG GAAATTCCGT
  GCAACATGCA CGAATAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135817792	ENSMUSSNP6552373	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320940434	CHEV_3_125552647	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52337414					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125643378 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	245 bp distal
Rr584615	regulatory region 584615	368 bp distal