rs52335957 SNP Detail

Summary

• ID
  rs52335957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138453599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCCTCTGGTC TGTTAGAATG GTCATCTGAT CCCATCCCTG
  TTAGCTGTCT CTGAGGTGCT TCCCAACCAC AGCCACACAC ACGCACACAC GCACACACAC
  R
  CGCGCGCGCA CACACACACA TACACACACA CACACACATA CACACACACT CTCCCCCTCC
  CTAGGCCCAA TATCCTTGCT TCTGTTGAAA CCTTGACTTA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147655284	ENSMUSSNP1195451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52335957					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138453599 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr602998	regulatory region 602998	1944 bp distal
Rr602999	regulatory region 602999	1486 bp distal
Rr603000	regulatory region 603000	953 bp distal
Rr603001	regulatory region 603001	701 bp distal
Rr603002	regulatory region 603002	1 bp distal
Tssr39875	transcription start site region 39875	979 bp downstream
Tssr44173	transcription start site region 44173	1030 bp upstream
Tssr44174	transcription start site region 44174	1021 bp upstream
Ubxn10	UBX domain protein 10	Intron