rs52334224 SNP Detail

Summary

• ID
  rs52334224
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116507657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CCTCTCCTCT CCTCTCTCCT
  T
  TCCCTCCTCT TCCCCTCCCC CTCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135671160	ENSMUSSNP922533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320895945	CHEV_3_116416926	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52334224					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116507657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	1499 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583765	regulatory region 583765	1788 bp distal
Rr583766	regulatory region 583766	1591 bp distal
Rr583767	regulatory region 583767	1369 bp distal
Rr583768	regulatory region 583768	904 bp distal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	1291 bp upstream
Tssr35335	transcription start site region 35335	1768 bp upstream
Tssr35336	transcription start site region 35336	1739 bp upstream
Tssr35337	transcription start site region 35337	1498 bp upstream
Tssr35338	transcription start site region 35338	1353 bp upstream
Tssr35339	transcription start site region 35339	1285 bp upstream