rs52332854 SNP Detail

Summary

• ID
  rs52332854
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75943274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATAAAATATG TCAAACAAAT TCAGTATTTA CTTACAACTT
  CATTGATTCA TGTTCTTTCT CTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  C
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTTCATTT GTTTGTTTGT TTGTTTGTTT
  TTCAAGACAG GGTTTCTCTG TATAGTCCTG GCTGTCTTGG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146576047	ENSMUSSNP1709148	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52332854					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75943274 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			376 bp distal
Rr594067	regulatory region 594067			622 bp proximal