rs52330787 SNP Detail

Summary

• ID
  rs52330787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62580342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAAGCCCT GGTCTTGAGT AGTGACTTAT CTAGTACTTG
  CTGTGTGACC TTGAACAAAT CACTTCACTT TTCTGATCAT CTGTTTCCTT ACACACACAC
  R
  CACACACACG CACACACACA CAAAGTGGGG GGTGGGGGGA GCTGAATACA GGTAGTCTCC
  AGGGTCAGGG TCACCAGAGT GCAGAATACT AGGAAATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146435345	ENSMUSSNP2543547	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321142894	CHEV_4_62323139	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52330787					SNP	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62580342 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	473 bp upstream
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	292 bp downstream
Rr593377	regulatory region 593377	484 bp distal
Rr593378	regulatory region 593378	within coordinates
Rr593379	regulatory region 593379	1087 bp proximal
Tssr37513	transcription start site region 37513	1515 bp upstream
Tssr37514	transcription start site region 37514	1578 bp upstream