rs52330761 SNP Detail

Summary

• ID
  rs52330761
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135751111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCCTG GTCTACAGAG
  TGAATTCCAG GACAGCCAGG GCTATACAGA GAAACCCTGT GTCGGAAAGA AAGAAAGGAA
  GAAAGAAAGA AAGGAAGGAA GGAAGGAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAGAGAGA GGAAGGAAGA AGACAAACTG TCTAGTTAAG AAGGAATACT
  K
  AATTCTCTTC TCCTGGAAAA CAGCATACAA AGTCCTCCAG TTGAACATGT TTGTTTTGCT
  TAACTGTGGC CACAGTTCTC CTCACAGGTT CAGGTTTCTA AACTGACTAC ATCTCTCAGT
  GTTTCACGAG TGGATATATA CTTAGGGATT ACACCTTCCC CCACACCTCA AAGCTACTCT
  GAAGCTGTGG TGCACCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556032	ENSMUSSNP4961917	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52330761					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135751111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1686 bp distal
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1828 bp downstream
Rr602240	regulatory region 602240	1789 bp distal
Rr602241	regulatory region 602241	1599 bp distal
Rr602242	regulatory region 602242	1702 bp proximal