rs52319982 SNP Detail

Summary

• ID
  rs52319982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116533134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTAAGTACA AACTGATGTT AAGGCAATCC TTCTTTTATA
  CATCTTGTTT GTTAAGGATT ATCAGAATTC TTCCAGGAAA AAAGGACCAT GCTTATAGTT
  Y
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG TCTCTCTCTC TCTCTGTTCT CTCTCTCTCT
  TTTAGCATTG CTAAGGATTA AAAAAGCAGC AGGCCTTTGG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135671482	ENSMUSSNP4097420	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52319982					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116533134 () rs orientation: forward

Symbol	Name	Function Class
Agl	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	514 bp downstream
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583773	regulatory region 583773	1727 bp distal
Rr583774	regulatory region 583774	1979 bp distal