rs52317690 SNP Detail

Summary

• ID
  rs52317690
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG TATGTAGAGA ATCACTGTCA
  C
  GAGAGAGAGA CAGACAGACA GCGAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148049635	ENSMUSSNP2229662	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321428598	CHEV_4_149561768	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52317690					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1125 bp distal
Rr605218	regulatory region 605218			918 bp distal
Tssr40380	transcription start site region 40380			240 bp downstream
Tssr40381	transcription start site region 40381			218 bp downstream
Tssr40382	transcription start site region 40382			209 bp downstream
Tssr40383	transcription start site region 40383			191 bp downstream
Tssr40384	transcription start site region 40384			1484 bp upstream
Tssr40385	transcription start site region 40385			1539 bp upstream
Tssr44720	transcription start site region 44720			262 bp upstream
Tssr44721	transcription start site region 44721			1492 bp downstream
Tssr44722	transcription start site region 44722			1526 bp downstream
Tssr44723	transcription start site region 44723			1576 bp downstream