rs52317542 SNP Detail

Summary

• ID
  rs52317542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31729313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCACAT GGTCTAGCCC
  TCACAGACAT GGACTAACCC AAGGCTAGAG GCAGGGACCG ATAAAATTAG TAACAAACGG
  AGTCCCAAGA CCAAGCCACC ACACAAAACA GTCACAGGCT GCTCTGTACC TTTCAATTAG
  TTAATTCCCC ACACCTGCCC TCAATACACT TCATTTGAAA TGGTCACTGT TACTTTAAAG
  R
  GCCAGCAACA AAAATGAATA CTAAAGAAAT TAAAATTAAA ACAAGACAAA AAAAATCTAA
  AAGTATTTGA GAAGGTCCTA CATATTCTGA ATGCCTCCAT TTAAAGTTCC TTCCATGTTC
  CTCTCTGAAA TGGAACCAAG CCTAGCCTCA CAGCTAGGTA ACCAGACCTA GAACTTCAGC
  GAGTGTGCTA TTCCCCGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257948	NES15756543	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52317542					SNP	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257948	NES15756543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31729313 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			1665 bp upstream
Rr370216	regulatory region 370216			1938 bp upstream
Rr525507	regulatory region 525507			780 bp proximal
Rr525508	regulatory region 525508			1175 bp proximal
Tssr147287	transcription start site region 147287			1878 bp downstream
Tssr147288	transcription start site region 147288			1914 bp downstream
Wdr4	WD repeat domain 4			Intron
				Noncoding-Transcript-Variant