rs52317091 SNP Detail

Summary

• ID
  rs52317091
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14945920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATAGCACA GTTCTAGGTC TCAGATGTTT TTCAATACAA
  AGGTAATTAC TATAATTGTT TCCCAGACCT TTGAGAAAAG AATTACCTTA TAGTGTGTGT
  K
  TGTGTGTGTG TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG GGAGAGAGAG AGAGAGAGAC
  AGAGAGACAG AGAGAGAGAC AGAGAGAGAG AGAGACAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320667938	CHEV_3_14880860	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52317091					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14945920 () rs orientation: forward

Symbol	Name	Function Class
Rr397609	regulatory region 397609	334 bp downstream
Rr573718	regulatory region 573718	1103 bp distal
Rr573719	regulatory region 573719	790 bp distal
Rr573720	regulatory region 573720	42 bp distal
Rr573721	regulatory region 573721	1938 bp proximal