rs52311641 SNP Detail

Summary

• ID
  rs52311641
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81481566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACGAAGGGTG GCGATTTAAC AGAAATGTTT CTTTCTGGAT
  GATAAAGGTA GCATCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  S
  TCTCTGTCTG TGTGTGTATG TATGTATGTA TGTATGTATG TATGTATGTA TATGCACACA
  CGTGTGCGCG TGCCAGAGTG AGAGAATACA GTTATAAAGG C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146853953	ENSMUSSNP7156032	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52311641					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81481566 () rs orientation: forward

Symbol	Name	Function Class
Rr594237	regulatory region 594237	1439 bp distal
Rr594238	regulatory region 594238	76 bp proximal
Rr594239	regulatory region 594239	917 bp proximal
Rr594240	regulatory region 594240	1194 bp proximal