rs52311482 SNP Detail

Summary

• ID
  rs52311482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90570394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGAGAG GGCTTTTGAG
  ATAAGAGGGA AGTCGGAGGG GCAAAATGGA GAGTGTGCAT GATATTTCAT TGTATATGTG
  TATGAAATTC TCAAAAGTAT AATAAAAATG TTACTCTCTG ACAGGTTGAC CACTCTTTAT
  GGATGGCCCC ACACCCATAT ATGTGTACAC ACACACACAC ACACACACAC ATACATATAT
  R
  TGTGTGTGTG TGTGTATGTA TAATACTAGT GGGTCATTAT AAGAAAAGGG AGCATGAAGT
  TGGGAGAGGG ACATGGAAGA GATATAGGTG GAGTTGAATT GGGGAGTAGG TAGTGAATAT
  GATCAAAATA CGTTGCATAG GTGGATGAAA TTTTTAAAAA ATAAAAAATA TTCATGTGGT
  ATTGATTCCC ATGAAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135478413	ENSMUSSNP2916235	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52311482					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90570394 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	1331 bp proximal