rs52307729 SNP Detail

Summary

• ID
  rs52307729
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAGAAT ATTGGCTTGA
  ATATGAGTAT TTTGGCGTCC TGGTCTACTC TACTGGGCCA TCCATAGCAG GTGGGGGTTT
  GAAAAGGACT CCAGAAGACT AAAGCCTTGG GACTCACCTG GGCAATCTGA AGCCTGTGGG
  GTTTTGTTTG TTTGTTTGTT GTTTGGTTTT GGTTTTTCAA GACAGGGTCT CTCTGTGTAG
  C
  CCTAGCTGTC CTGGCACTCA CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCT
  GCTTCTGCCT CCCGAGTGCT GGGATTAAAG GCGTGTGCCT CCACGCTCGG CTTGAAGCCT
  GTGTTTTATA GAAGGAAAAA AAATTGAGGT GCAGTGAAAT GATTGGCTGT CAGATACGAC
  GACAGGTACT AGACTGTGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147553277	ENSMUSSNP4630283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52307729					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623932 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1687 bp upstream
Rr602183	regulatory region 602183	1217 bp distal
Rr602184	regulatory region 602184	923 bp distal
Rr602185	regulatory region 602185	51 bp distal
Rr602186	regulatory region 602186	251 bp proximal
Rr602187	regulatory region 602187	374 bp proximal
Rr602188	regulatory region 602188	402 bp proximal
Rr602189	regulatory region 602189	1648 bp proximal
Tssr39650	transcription start site region 39650	1426 bp downstream
Tssr39651	transcription start site region 39651	1225 bp downstream
Tssr39652	transcription start site region 39652	1145 bp downstream
Tssr44006	transcription start site region 44006	1861 bp downstream