rs52305998 SNP Detail

Summary

• ID
  rs52305998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144680295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAACCAAC AGCGCCAACT GGAGGTAGTA GGTTATTAAC
  AAAGGAAACC AGAGGACATG AAGGGGCAAT GGAGACATGT TAGATAGATA GATAGATAGA
  Y
  AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGTCAAAG
  AATGAACAAA AGTATTCTAT TCAATGGAAG AAGATGCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147841581	ENSMUSSNP69840	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52305998					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144680295 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	within coordinates
Gm69556	predicted gene, 69556	within coordinates
Rr604272	regulatory region 604272	1530 bp distal
Rr604273	regulatory region 604273	71 bp distal
Rr604274	regulatory region 604274	1956 bp proximal