rs52304884 SNP Detail

Summary

• ID
  rs52304884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194859944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTCAGTGTTA TATATTTAGT TTCCATGTCT CTTTCTTTAA
  TTTGAAAAAG ATCTTTGGGA GTAGGAGGTG TGTGTGTGTG CATGTGTGTG TGTGTGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTTATGTGGT TTGCACGTGT ACATGAAGAT
  GTGTGGAGAC TAGAAGCTAA TATCAATGTC TTTCTTGCCA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146544346	ENSMUSSNP1804307	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52304884					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194859944 () rs orientation: forward

Symbol	Name	Function Class
Cr2	complement receptor 2	920 bp upstream
Rr426767	regulatory region 426767	579 bp distal
Rr426768	regulatory region 426768	861 bp distal
Rr426769	regulatory region 426769	743 bp distal
Tssr384	transcription start site region 384	954 bp upstream
Tssr385	transcription start site region 385	942 bp upstream
Tssr15875	transcription start site region 15875	990 bp upstream
Tssr15876	transcription start site region 15876	911 bp upstream
Tssr15877	transcription start site region 15877	853 bp upstream