rs52304848 SNP Detail

Summary

• ID
  rs52304848
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124381115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAAAT AGAAAACTGT
  TTAAAGAACA AAAGCCTATG TAACTTATGA CACCTCCCTG GGTGTGATTG GTAAATCATG
  TTTCAAGAGT ATTACAAGCA TTTGTAAAAC AGTACTCAGA AAAAAAAAAT CATTGACCTA
  AAAACACATA AAATCAAAAT GAAAATTAAG AAATCAAGGA AAACATATAA AAATTTCCCT
  K
  ATTTTTCTGA GAATAAGCAG ACTACCAAAG TCACACAGGA ATCTAAGGCA AAATAAGAAC
  TCAGTAAAAA AATGTTACTT GTATACATAT TTCTGCTGCA GGCTAGAATT CTCCAGAATT
  CTCGTAAAAT AAAGATTCCT CACTGGAGAC TGAGGAAAGG AATGTAGATA AGGTGGTGGT
  GTCTCTTTGG ATCCAATAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135790738	ENSMUSSNP1330173	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320929400	CHEV_3_124290384	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52304848					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124381115 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	1062 bp downstream
Rr584593	regulatory region 584593	1498 bp distal
Rr584594	regulatory region 584594	149 bp proximal
Rr584595	regulatory region 584595	261 bp proximal