rs52303578 SNP Detail

Summary

• ID
  rs52303578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCATTGT GGATTAAGGC
  ATGAAAGCTA AATGTGATAT GGACAGATGT AAACATTATT ACATGCACAT TTCCCTACAT
  GCATATGTTA TTACAGAAAC ACATTTATAT TAATTGGAGG CAGATGTGTA ATATTCACAT
  TAAAAACTAA CATTATGGAA ATATATGTTT TATATACATA TATATATATA TATGAAAATA
  Y
  ATGGAAAGGA TAACTTTTTT GTTTTGTTTT AAGCTGAGGT AAAGGCAAAT TGATCCTTCA
  AAAAAAAACT TATAAAATAA TCTAGCCAGC AAAACTTAAT TGTGTAATTG AATAAGTTAT
  TGTCATTACA GGATTTAAGA TTATTCTTGT AACTATTTCA GAAGTATAAG AAGGTGTCAC
  AAGGGAGGCA CAGGAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss378552005	MGP_WTSI_9_95310340	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	C	T	T	C	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs52303578					SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	C	T	T	C	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378552005	MGP_WTSI_9_95310340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291974 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	748 bp downstream
Gm35915	predicted gene, 35915	1367 bp downstream
Gm37805	predicted gene, 37805	1353 bp downstream
Rr684791	regulatory region 684791	1637 bp distal