rs52302939 SNP Detail

Summary

• ID
  rs52302939
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73358530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGCTGCT GCAAGGTGCC
  TGGTCCAGGC AGACACAAGG AACAGGTTTT CACTGGCATG GGGCCAATCC TCTTGCTTAG
  GTATCCGTTC ACAAGGCATA TTTGCTCCCT TTGGCTTTTT AATTTATTAA TTGATTGAAT
  GATTAATTAA TTAATTAATT TCTTAGGACA GGGTTTCTCT GCTGGCTGTC TTGGAACTCA
  M
  CCTGTAGACA AGGCTGGGCT TGCCACCTGG CTCTTAGTAG GTTTTTTTTT TTTTTTCCTT
  TCTCGGTGTA CAGTAGAAGT AGGTCAGGGT CAGTGGCAGA GGACAACTTG AGGGAGTTGG
  TTCTCTGATC ATGTTGTAGG TTCAGGACAT TAAACTCAGG TTATCAGTTA GGTGGCAATT
  GTTTTTTTTC CCACTGAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148110608	ENSMUSSNP5284099	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52302939					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73358530 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	183 bp distal
Tssr4621	transcription start site region 4621	1141 bp upstream
Tssr4622	transcription start site region 4622	1203 bp upstream
Tssr131529	transcription start site region 131529	1153 bp upstream
Tssr134702	transcription start site region 134702	587 bp downstream
Tssr134703	transcription start site region 134703	627 bp downstream
Tssr134704	transcription start site region 134704	642 bp downstream
Tssr134705	transcription start site region 134705	654 bp downstream