rs52302629 SNP Detail

Summary

• ID
  rs52302629
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165949302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGAACCT GAGGCCAGTG
  AGGGAGCCTC TCTCAATAAC AAAGTACATG GAGCCTAAGG GATGACACTT GAGGTTGACC
  TCTGACCTTA ACACACTTAT CCCACACACA TGATCATGTA CACACACACA GAGAGAGAGA
  GAGAGAGAGA GAGATCCAGA CCCCACACAC ACACACACAT CACCACCACC AGCACCACCA
  M
  CAACAACAAT AGCCCCACTG GGAATGGTTT TATCAGGGTT GGTTTAAGCT TCACTCTATG
  CAGGGGGATC GCTTCTTCCA AAGCCGCGCT TATCATGTAA GATAGTAATA GCTCACATTA
  AAGACTGTGG CAACATGGCA GGAAGAGAAA TAGCCCATGG TGTGTCATCC TGTGTGAGCC
  TTCCTGGAAG ACATGTGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146013034	ENSMUSSNP1850180	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52302629					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165949302 () rs orientation: forward

Symbol	Name	Function Class
Rr422532	regulatory region 422532	1494 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	Intron
Tssr14808	transcription start site region 14808	588 bp upstream