rs52300989 SNP Detail

Summary

• ID
  rs52300989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150352269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC TCGGGGAAAA AAACAAAAAA
  S
  AACAACAACA ACAACCACAA CCAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148051565	ENSMUSSNP3800515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321428882	CHEV_4_149641921	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52300989					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150352269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15349	CpG island 15349	1146 bp proximal
Rr377418	regulatory region 377418	412 bp upstream
Rr605259	regulatory region 605259	589 bp distal
Rr605260	regulatory region 605260	918 bp proximal
Rr605261	regulatory region 605261	1339 bp proximal