rs52300490 SNP Detail

Summary

• ID
  rs52300490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCCTT ACACACCAGG
  CATGCATTTG GTGCACAGAT ATGCATGCAC ACAATAATAA AAATAAATCT AAAATTTAAA
  CCTTTTGTTA TTGGTGGGGA GTGGGGGGGG GGCTACCATA GTGCACAGGT GGGGGTCAGG
  GGACAACTTT GAAGGGTCTG TTCTCTCCTT CCACTGTGGC TCTTGGACCT AAATTCAAGC
  R
  GTCAGGCTTG TATGGCAAGT GTTCTGACTC ACTGAACCAT CTTACGGCTG CTGTTGTTGT
  TGTTGTTTTT TTTGGTTTTT TGTTTTGTTT GTTTTGTTTT TGAGACAGGC TGTTTCTGTG
  TAACAGAGCC CTGGCTATCC TAGACTCACT TCATAGACCC AGGACGGCTT TGAATTCACA
  GAGATCCACC TGTCTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145879525	ENSMUSSNP4897295	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52300490					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932207 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	Intron
Tssr69200	transcription start site region 69200	673 bp downstream
Tssr69201	transcription start site region 69201	535 bp upstream
Tssr69202	transcription start site region 69202	567 bp upstream
Tssr69203	transcription start site region 69203	615 bp upstream
Tssr69204	transcription start site region 69204	746 bp upstream
Tssr69205	transcription start site region 69205	1678 bp upstream