rs52300039 SNP Detail

Summary

• ID
  rs52300039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAGGT GATTCAGTGG
  TTAAGAGCAC TGGCTGCTCT TCCACAGGAC CCAGGTTCAA TTCCCAGCAC CCACATAGCT
  GCTTGCAATT GCCTGAAACC CCAGACCCAG GAGATCCGAA GCCTCTTCTG ATCATTGAGG
  GCACCAGGCA CACATGTGGT GTGCATACAC ACATGCAGGC AAAACACTCA CTCACATGCC
  Y
  ATATGTACAT GCATGCACAC ACATGCACAC TCACATGCAC ACGTGCACAC ACGAGCATCC
  ACAGGCACAT GCACACATGC TTGTGTGCAC ATACCAGGCA TGGTGAAGAA TACTATAATC
  CCAACACTGG GTAGATGGAG ACAGCCAGCC TAGCCTTGCG GGTGAATCCT GGGTTCCAGT
  GAGAGACCTT GCAGCAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147553113	ENSMUSSNP809489	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321353448	CHEV_4_135450306	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52300039					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621702 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1003 bp upstream
Rr602181	regulatory region 602181	1242 bp distal
Rr602182	regulatory region 602182	926 bp distal
Rr602183	regulatory region 602183	600 bp proximal
Rr602184	regulatory region 602184	1014 bp proximal
Rr602185	regulatory region 602185	1580 bp proximal
Tssr39650	transcription start site region 39650	789 bp upstream
Tssr39651	transcription start site region 39651	993 bp upstream
Tssr39652	transcription start site region 39652	1023 bp upstream