rs52299921 SNP Detail

Summary

• ID
  rs52299921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTCTGGG GAAGCAGGGG TATTTGTATC TCTGGGAGTT
  CCAGGCCATA ATTTCCTGGT AGCTATCTAA GTATAGGTAT ATAGGTATAA AGGTGTGTGT
  R
  TGTGTGTGTA TGTGTGTGTG TGAGAGAGAG GGCGGGGGGG AGCACCACAG TCCCTCTAAT
  CACGTTCAAC TTTCATCCCA TAGAAAGGTT GAGGCCCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147338525	ENSMUSSNP3334673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52299921					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	586 bp distal
Gm75025	predicted gene, 75025	1565 bp downstream
Gm75032	predicted gene, 75032	1554 bp upstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	718 bp upstream
Rr397235	regulatory region 397235	567 bp downstream
Rr563557	regulatory region 563557	752 bp distal
Rr563558	regulatory region 563558	228 bp distal
Tssr25825	transcription start site region 25825	704 bp upstream