rs52299455 SNP Detail

Summary

• ID
  rs52299455
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145854239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAACTGTT TAATGACCTG TCTTGTCAGT
  GGGTAGATAT AGTAAGAAGA AAGGTTTTGG AGTGTCAGAG ACCTAAATAG AAAGAGTTCG
  TCTGCTAGTG GCTGTTTATG TGACTTGGGA GTAGTAACAA ATGTCTGTGA ACACATACAc
  A
  ctctctctct ctctctctct ctctctctct ctctctctct ctctcgtgtg tgtgtgtgtg
  tgtgtgtgtg tgtgtgtgtg tgtgtgtACC CCACACATAG GTATCACTCA TGACTtgcag
  agaccagagg acttgctgga atggattctc                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136042540	ENSMUSSNP6714547	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321009676	CHEV_3_145811448	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52299455					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145854239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13913	CpG island 13913	1278 bp proximal
Mcoln2	mucolipin 2	1349 bp upstream
Rr586937	regulatory region 586937	859 bp proximal
Rr586938	regulatory region 586938	1567 bp proximal
Rr586939	regulatory region 586939	1701 bp proximal
Tssr32333	transcription start site region 32333	1338 bp upstream
Tssr32334	transcription start site region 32334	1345 bp upstream
Tssr32335	transcription start site region 32335	1374 bp upstream
Tssr32336	transcription start site region 32336	1744 bp upstream
Tssr32337	transcription start site region 32337	1772 bp upstream
Tssr36030	transcription start site region 36030	1181 bp downstream