rs52297041 SNP Detail

Summary

• ID
  rs52297041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154610797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT ACACACCACA CACACAAGCA
  Y
  ATGCACACAC ACACACACCC TACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148102937	ENSMUSSNP1173785	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321439210	CHEV_4_153900449	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52297041					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154610797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606198	regulatory region 606198			within coordinates
Rr606199	regulatory region 606199			998 bp proximal
Rr606200	regulatory region 606200			1934 bp proximal