rs52296287 SNP Detail

Summary

• ID
  rs52296287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96012593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG GGGGTAGGGA GGGAGGAGAG
  R
  GAGAGGGAGA GGGGAGAGAG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135513853	ENSMUSSNP3399141	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320841458	CHEV_3_95909204	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52296287					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96012593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			174 bp distal
Gm30044	predicted gene, 30044			925 bp upstream
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581150	regulatory region 581150			900 bp distal
Rr581151	regulatory region 581151			744 bp distal
Rr581152	regulatory region 581152			within coordinates
Tssr30678	transcription start site region 30678			792 bp downstream
Tssr30679	transcription start site region 30679			710 bp downstream
Tssr30680	transcription start site region 30680			454 bp downstream