rs52295546 SNP Detail

Summary

• ID
  rs52295546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAAAGC AGCCAGGGCT
  ACACAGTGAG ACCCTGCTTC GAAAACAAAC AAACATTTCA TCAAAGTTAA AATCCACACT
  CCAGAGCCGG GCGTGGTGGC GCACGCCTTT AGTCCCAGCA CTTGGGAGGC AGAGGCAGGC
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGGGCTA
  Y
  ACAGAGAAAC CCTGTCTAGG AAAACCAAAA AAAAAAAAAA AAAAAAATCC ACACTCCATC
  AAGCACAGAT TTACCATAAC CTGTTTCAAT TACTTTCAAC CTAACCAAAA CCAACCCTGG
  CACAGTCCAA GGGAAAGAAC AGAAAGCCTG GCAAGGCTAA AAGCAGCTCC AGGGAGCTCT
  GGTCACCTGC TCGATGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147739664	ENSMUSSNP1098429	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52295546					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1408 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			905 bp proximal
Rr603783	regulatory region 603783			1178 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant