rs52292423 SNP Detail

Summary

• ID
  rs52292423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118999546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TTGGGGGGGG CGGGGAGCGG
  R
  AATTCAAGAC AGGATTTCCC TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147324429	ENSMUSSNP4099192	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320473954	CHEV_2_118994801	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52292423					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118999546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	812 bp distal
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	1282 bp distal
Rr563427	regulatory region 563427	1429 bp distal
Rr563428	regulatory region 563428	682 bp distal
Tssr19604	transcription start site region 19604	1286 bp downstream
Tssr19605	transcription start site region 19605	1230 bp downstream