rs52290151 SNP Detail

Summary

• ID
  rs52290151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75846220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGAGAGC ACCAGATCTC ATTATAGATG ATTATAAGCC
  ACCATGTGGT TGCTGGGATT TGAACTCAGG ATCTCTAGAA GAGCAGGCAG TGCTCTTAAC
  Y
  GCTGAGCCAT CTCTCCAGCC CTGACATGGC TTTTGATAGA AACAAACAAA CAAACAAACA
  AACAATGGGG AGAAAATTTC ATCAGAAGTA GGAATTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146769897	ENSMUSSNP4022710	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320352404	CHEV_2_75853933	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52290151					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75846220 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1019 bp proximal