rs52287451 SNP Detail

Summary

• ID
  rs52287451
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153268513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGGCTGA GAATGGGCAT CAATAATTCA CACACAAAAG
  CTGGGAGCCA GGAAGGAGGT AGGGAAGGTG AAGTGCTAGA GTTAGCAGCA CCAGCCCCCA
  M
  CAGCCCCCAC CAGCCCCCAC CCAGCCCCCA CCAGCCCCCA CCAGCCCCCA CCAGCCCTCA
  CCAGCCCCCA CCAGCCCCCA CCAGCCCCCA CCAGCCCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147993443	ENSMUSSNP6472544	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320564086	CHEV_2_153252329	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52287451					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153268513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567636	regulatory region 567636			within coordinates
Rr567637	regulatory region 567637			292 bp proximal
Rr567638	regulatory region 567638			1940 bp proximal
Tssr699	transcription start site region 699			1889 bp upstream