rs52284876 SNP Detail

Summary

• ID
  rs52284876
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCTCTCTCT TTCTCTCTCT CTTTCTCTCT CTCTCTCTCT
  CTCTCTATGT CTCTATGTCT CTGTCTGTCT CTCTGTCTCT GTCTCTGTCT CTCTGTCTCT
  C
  TCTCTGTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCAGTACA
  TTGAGTTAAT GGACAGCCTT TTATCTCCAC TATCCCCATA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147923821	ENSMUSSNP276316	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52284876					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218251 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	within coordinates
Rr566887	regulatory region 566887	224 bp distal
Rr566888	regulatory region 566888	800 bp distal
Rr566889	regulatory region 566889	419 bp distal