rs52284496 SNP Detail

Summary

• ID
  rs52284496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121128235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG TAGGTCAAAA AACAGCTTGC
  R
  GGAGTCATTC CTCTTTGTAC CTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss147383198	ENSMUSSNP264805	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320482574	CHEV_2_121123490	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs52284496					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121128235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			1835 bp proximal
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			2 bp distal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			21 bp distal
Gm14978	predicted gene 14978			1746 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr563800	regulatory region 563800			1757 bp distal
Rr563801	regulatory region 563801			1256 bp distal
Rr563802	regulatory region 563802			within coordinates
Tssr19741	transcription start site region 19741			838 bp upstream
Tssr19742	transcription start site region 19742			1729 bp upstream