rs52283796 SNP Detail

Summary

• ID
  rs52283796
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAGAGC AGCATGTCTC
  TGAAGTGTTC TGTATGGACT TCTGTCTGCA GGCTGGAAAC GGCCACAGCA GTTGCTGACT
  GCAGTGTGTA GCATCTTGGA GACCTAGACA GGGTTGAGTT CCCTCTGCCA GCAGTAGTTT
  AGGAAGATCT CTTCCCTTGC CAGAGGCAGT AGCTTCGAGC ACAGGGCCCT AGTTCTACCG
  W
  GAGTCAGTCC CTGGAATCCT GAAGGCAGCC ATCTCTTCCT CTTCCTCTTC CTCGTCTTCC
  CCCTTCTCCT CCTTCTTTTC CTCCTCCTCA GAATCCGGGA GTGTCCTGCA TTCCAAAGCC
  CAAATTTGCT GGGCACCAGA TGGGTCCCAA TTGTTGATAT TTTCTTTCTG CTGTTGTTTC
  CCCATGTTTG TCTCTAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135873158	ENSMUSSNP319139	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320957518	CHEV_3_127557246	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52283796					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647977 () rs orientation: forward

Symbol	Name	Function Class
Rr584884	regulatory region 584884	1029 bp distal
Rr584885	regulatory region 584885	159 bp distal
Rr584886	regulatory region 584886	795 bp distal