rs52282659 SNP Detail

Summary

• ID
  rs52282659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCTTTTT CAGCGGTATA GCCACGGGTG AGTTATCTGT
  GTCCCAGCAG ATAGCTCCAC ACCCATGCCC CACATGGGTG GCCCCGGTTA AGCTCAGGGG
  R
  TCACAAAATA CAAAACAGAA ACAAAACAAA AGGAGACAGG GAAGGAAGGT GGGGACTTGG
  TGGAGGAGGG GAACTGGCGA GGGTGGGAAG AGGATAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135731785	ENSMUSSNP7133738	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320906998	CHEV_3_121620292	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52282659					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711023 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	1811 bp distal
Rr584205	regulatory region 584205	within coordinates