rs52281548 SNP Detail

Summary

• ID
  rs52281548
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108826101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCTCCAG GGAGTAAGGG GGAGAGTGAC AGAGCAGCCT
  ACCTCAGCCA TAGGGATAAG CATGAGTAAA TGCACACGTG TACATATGGA GCGCGCGCGC
  A
  CACACACATA CAGAAACACA CACACACACA CACACACACA CACACACACA CACACACACA
  CGGAGGGGGG AGGGAGAGGG AGGGAGGGAG AGAGAGATT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss133510399	ENSMUSSNP347621	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52281548					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108826101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636224	regulatory region 636224			1530 bp distal