rs52280464 SNP Detail

Summary

• ID
  rs52280464
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17674225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGGGCATTTA CAATTGAAAA AGAATGAAAA AAAAGCCAGA
  AAGACAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA CAGACAGACA GACAGACAGA
  A
  AGAAAGAAAG AAAAGAAAGA AAGAAAGGAA GAAAAAGAAA GAAAAAGAAC TGTCTTCTAG
  TAATGTCAGA TGCTTCAGCC ATAAAGTCTC ACCAGCATGA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133020131	ENSMUSSNP2523132	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52280464					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17674225 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	1222 bp upstream
Rr626829	regulatory region 626829	1065 bp proximal
Rr626830	regulatory region 626830	1348 bp proximal