rs52280372 SNP Detail

Summary

• ID
  rs52280372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85741363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTTTCTTTT CTTTTCTGTC CTTCCTTCCT TCCTTCCTTC
  CTTCCTTCCT TCCTTCCTTC CTTCCTTCCC TTCCTTCCTT CCTTCCTTCC TTCCTTTCTT
  Y
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT TTTGAACAGA TAAGGCTGAG
  TGTCAACTGC GCAGCGAAGG AGACTTCTAT TCTGAGCACA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133352618	ENSMUSSNP855733	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52280372					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85741363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nat8f3	N-acetyltransferase 8 (GCN5-related) family member 3			Intron
				Noncoding-Transcript-Variant
Rr633260	regulatory region 633260			910 bp distal
Rr633261	regulatory region 633261			440 bp distal
Rr633262	regulatory region 633262			1432 bp proximal
Rr633263	regulatory region 633263			1678 bp proximal