rs52275800 SNP Detail

Summary

• ID
  rs52275800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133963702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTTTGTG
  TAACCAACTG TTGGTGTTAG ACGACAACCT CTGTGATTCA GTTCTGTCCT TCCATCATGT
  GTTATAGAGA TTGCACTCAG GGCAACAGAC ACACAGCAAG TATTTTTACC AGCTCATCCA
  CCTCAGCAGC CTTAGCATTG GTTCTTCTTC TTCTTCTTCC TCCTCCTCCT CCTCCTCTTC
  Y
  TCCTCCTCTT CCTTTTCCTC CTCTCCTTCT TCCTCATCTT CTTCTTGTTC TCCCTCCTCC
  TCTCTCTCTC TCCTTTTCTC CTTTTAAAGA TCTGTTTACT TTTTACCTCT GTGTGTGTCT
  GGGGGTAAAG AGTATGTCAA CTTGAGTGCA GGTGCCCTGG AAAGCCAGAG GCACTGGATG
  CCCCTGGAGC TGGAGTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370141079	MGP_WTSI_6_133936757	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	T	C	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	C	C	T	C	C	T	C	T	C	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52275800					SNP	T	T	T	C	C	T	C	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	C	C	T	C	C	T	C	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370141079	MGP_WTSI_6_133936757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133963702 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	151 bp distal
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1383 bp distal